Package: VertexWiseR
Title: Simplified Vertex-Wise Analyses of Whole-Brain and Subcortical
        Surface
Version: 1.5.2
Date: 2026-06-25
Authors@R: c(
    person("Junhong", "Yu", , "junhong.yu@ntu.edu.sg", role = "aut",
           comment = c(ORCID = "0000-0002-2563-9658")),
    person("Charly", "Billaud", , "charly.billaud@ntu.edu.sg", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0001-3466-9963"))
  )
Maintainer: Charly Billaud <charly.billaud@ntu.edu.sg>
Description: Provides functions to run statistical analyses on
        surface-based neuroimaging data, computing measures including
        cortical thickness and surface area of the whole-brain and of
        the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep',
        'XCP-D', 'HCP' and 'CAT12' preprocessed datasets, 'HippUnfold'
        hippocampal outputs and 'SubCortexMesh' subcortical outputs for
        a given sample by restructuring the data values into a single
        file. The single file can then be used by the package for
        analyses independently from its base dataset and without need
        for its access.
License: GPL-3
URL: https://cogbrainhealthlab.github.io/VertexWiseR/
Suggests: R.rsp
VignetteBuilder: R.rsp
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
SystemRequirements: Miniconda3 (v24.9.2), Python (<= v3.12), BrainStat
        (v0.4.2), vtk (v9.3.1), numpy (<= v1.26.4), nilearn (<=
        v0.12.0), netneurotools (<= v0.2.5)
Depends: R (>= 4.0.0)
Imports: doParallel, doSNOW, foreach, freesurferformats, fs, gifti,
        grDevices, grid, igraph, methods, parallel, plotly, png,
        rappdirs, RColorBrewer, reticulate, stats, stringr, tools,
        utils
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3
Repository: https://cogbrainhealthlab.r-universe.dev
Date/Publication: 2026-06-29 00:55:46 UTC
RemoteUrl: https://github.com/cogbrainhealthlab/vertexwiser
RemoteRef: HEAD
RemoteSha: 433e8c0e58a3b207ed870bd5a09e9c1c88e695d7
NeedsCompilation: no
Packaged: 2026-06-29 05:41:39 UTC; root
Author: Junhong Yu [aut] (ORCID: <https://orcid.org/0000-0002-2563-9658>),
  Charly Billaud [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-3466-9963>)