Package: VertexWiseR 1.1.0
Charly Billaud
VertexWiseR: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface
Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep' and 'HCP' preprocessed datasets and 'HippUnfold' hippocampal segmentation outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.
Authors:
VertexWiseR_1.1.0.tar.gz
VertexWiseR_1.1.0.zip(r-4.5)VertexWiseR_1.1.0.zip(r-4.4)VertexWiseR_1.1.0.zip(r-4.3)
VertexWiseR_1.1.0.tgz(r-4.4-any)VertexWiseR_1.1.0.tgz(r-4.3-any)
VertexWiseR_1.1.0.tar.gz(r-4.5-noble)VertexWiseR_1.1.0.tar.gz(r-4.4-noble)
VertexWiseR_1.1.0.tgz(r-4.4-emscripten)VertexWiseR_1.1.0.tgz(r-4.3-emscripten)
VertexWiseR.pdf |VertexWiseR.html✨
VertexWiseR/json (API)
| # Install 'VertexWiseR' in R: |
| install.packages('VertexWiseR', repos = c('https://cogbrainhealthlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cogbrainhealthlab/vertexwiser/issues
- MNImap_hip - Hippocampal surface in MNI space
- ROImap_fs5 - Atlas parcellations of fsaverage5
- ROImap_fs6 - Atlas parcellations of fsaverage6
- ROImap_fslr32k - Atlas parcellations of FS_LR32k
- ROImap_hip - Atlas parcellations of the hippocampus
- edgelist_hip - List of edges for the hippocampal template
- fs6_to_fs5_map - Fsaverage6 template object for nearest neighbor conversion in fs6_to_fs5
- hip_points_cells - Points and cells data required to build the hippocampus surface template
Last updated 15 hours agofrom:431e8ebec6. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 20 2024 |
| R-4.5-win | OK | Nov 20 2024 |
| R-4.5-linux | OK | Nov 20 2024 |
| R-4.4-win | OK | Nov 20 2024 |
| R-4.4-mac | OK | Nov 20 2024 |
| R-4.3-win | OK | Nov 20 2024 |
| R-4.3-mac | OK | Nov 20 2024 |
Exports:atlas_to_surfdecode_surf_datafs_statsfs5_to_fs6fs6_to_fs5FSLRvextractHIPvextractplot_surfplot_surf3dRFT_vertex_analysissmooth_surfsurf_to_atlassurf_to_volSURFvextractTFCE_thresholdTFCE_vertex_analysisTFCE_vertex_analysis_mixedVWRfirstrun
Dependencies:abindaskpassbase64encbitopsbslibcachemciftiToolsclicodetoolscolorspacecpp11crosstalkcurldata.tabledigestdoParalleldoSNOWdotCall64downloaderdplyrevaluatefansifarverfastmapfieldsfontawesomeforeachfreesurferformatsfsgenericsggplot2giftigluegtableherehighrhtmltoolshtmlwidgetshttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisemgcvmimemunsellnlmeopenssloro.niftipillarpkgconfigpkgfilecacheplotlypngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppTOMLreticulaterglrlangrmarkdownRNiftirprojrootsassscalessnowspamstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml
Example analyses with VertexWiseR - Example 1
Rendered fromVertexWiseR_Example_1.html.asisusingR.rsp::asison Nov 20 2024.Last update: 2024-09-04
Started: 2024-09-04
Example analyses with VertexWiseR - Example 2
Rendered fromVertexWiseR_Example_2.html.asisusingR.rsp::asison Nov 20 2024.Last update: 2024-09-04
Started: 2024-09-04
Extracting surface data in VertexWiseR
Rendered fromVertexWiseR_surface_extraction.html.asisusingR.rsp::asison Nov 20 2024.Last update: 2024-09-04
Started: 2024-09-04
