Package: VertexWiseR 1.3.0

Charly Billaud

VertexWiseR: Simplified Vertex-Wise Analyses of Whole-Brain and Hippocampal Surface

Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep', 'HCP' and 'CAT12' preprocessed datasets and 'HippUnfold' hippocampal segmentation outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.

Authors:Junhong Yu [aut], Charly Billaud [aut, cre]

VertexWiseR_1.3.0.tar.gz
VertexWiseR_1.3.0.zip(r-4.5)VertexWiseR_1.3.0.zip(r-4.4)VertexWiseR_1.3.0.zip(r-4.3)
VertexWiseR_1.3.0.tgz(r-4.5-any)VertexWiseR_1.3.0.tgz(r-4.4-any)VertexWiseR_1.3.0.tgz(r-4.3-any)
VertexWiseR_1.3.0.tar.gz(r-4.5-noble)VertexWiseR_1.3.0.tar.gz(r-4.4-noble)
VertexWiseR_1.3.0.tgz(r-4.4-emscripten)VertexWiseR_1.3.0.tgz(r-4.3-emscripten)
VertexWiseR.pdf |VertexWiseR.html
VertexWiseR/json (API)
NEWS

# Install 'VertexWiseR' in R:
install.packages('VertexWiseR', repos = c('https://cogbrainhealthlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cogbrainhealthlab/vertexwiser/issues

Pkgdown site:https://cogbrainhealthlab.github.io

Datasets:

On CRAN:

Conda:

5.86 score 1 stars 12 scripts 377 downloads 19 exports 100 dependencies

Last updated 6 days agofrom:500546b699. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-winOKMar 26 2025
R-4.5-macOKMar 26 2025
R-4.5-linuxOKMar 26 2025
R-4.4-winOKMar 26 2025
R-4.4-macOKMar 26 2025
R-4.4-linuxOKMar 26 2025
R-4.3-winOKMar 26 2025
R-4.3-macOKMar 26 2025

Exports:atlas_to_surfCAT12vextractdecode_surf_datafs_statsfs5_to_fs6fs6_to_fs5FSLRvextractHIPvextractplot_surfplot_surf3dRFT_vertex_analysissmooth_surfsurf_to_atlassurf_to_volSURFvextractTFCE_thresholdTFCE_vertex_analysisTFCE_vertex_analysis_mixedVWRfirstrun

Dependencies:abindaskpassbase64encbitopsbslibcachemciftiToolsclicodetoolscolorspacecpp11crosstalkcurldata.tabledigestdoParalleldoSNOWdotCall64downloaderdplyrevaluatefansifarverfastmapfieldsfontawesomeforeachfreesurferformatsfsgenericsggplot2giftigluegtableherehighrhtmltoolshtmlwidgetshttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisemgcvmimemunsellnlmeopenssloro.niftipillarpkgconfigpkgfilecacheplotlypngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRcppTOMLreticulaterglrlangrmarkdownRNiftirprojrootsassscalessnowspamstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml

Example analyses with VertexWiseR - Example 1

Rendered fromVertexWiseR_Example_1.html.asisusingR.rsp::asison Mar 26 2025.

Last update: 2024-09-04
Started: 2024-09-04

Example analyses with VertexWiseR - Example 2

Rendered fromVertexWiseR_Example_2.html.asisusingR.rsp::asison Mar 26 2025.

Last update: 2024-09-04
Started: 2024-09-04

Extracting surface data in VertexWiseR

Rendered fromVertexWiseR_surface_extraction.html.asisusingR.rsp::asison Mar 26 2025.

Last update: 2024-09-04
Started: 2024-09-04

Python troubleshooting

Rendered fromPython_troubleshooting.html.asisusingR.rsp::asison Mar 26 2025.

Last update: 2024-12-12
Started: 2024-12-12