Package: FCtools 2.3.1

Charly Billaud

FCtools: Functional Connectivity Tools

Analyzing and visualizing brain connectivity data, including network-based statistics (NBS) for linear and linear mixed models, both at edge level and functional network level (Yeo's 7-networks (Schaefer et al. (2017) <doi:10.1093/cercor/bhx179>)). Plots include edge-wise connectograms, chord diagrams, network connectograms, heatmaps, and 3D glass brain connectivity plots. 'FCtools' works with vectors of edges (derived from connectivity/adjacency matrices) from the 'Brainnetome' (Fan et al. (2016) <doi:10.1093/cercor/bhw157>), 'Schaefer' (100 or 200, each with 19 'ASeg' subcortices) (Schaefer et al. (2017) <doi:10.1093/cercor/bhx179>, Fischl et al. (2002) <doi:10.1016/S0896-6273(02)00569-X>), and 'Automated Anatomical Labeling' (AAL) atlases (Tzourio-Mazoyer et al. (2002) <doi:10.1006/nimg.2001.0978>).

Authors:Junhong Yu [aut], Charly Billaud [aut, cre]

FCtools_2.3.1.tar.gz
FCtools_2.3.1.zip(r-4.7-any)FCtools_2.3.1.zip(r-4.6-any)FCtools_2.3.1.zip(r-4.5-any)
FCtools_2.3.1.tgz(r-4.6-any)FCtools_2.3.1.tgz(r-4.5-any)
FCtools_2.3.1.tar.gz(r-4.7-any)FCtools_2.3.1.tar.gz(r-4.6-any)
FCtools_2.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FCtools/json (API)

# Install 'FCtools' in R:
install.packages('FCtools', repos = c('https://cogbrainhealthlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cogbrainhealthlab/fctools/issues

Pkgdown/docs site:https://cogbrainhealthlab.github.io

On CRAN:

Conda:

5.06 score 6 stars 10 scripts 589 downloads 13 exports 99 dependencies

Last updated from:259f554eed. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develWARNING208
source / vignettesOK187
linux-releaseWARNING196
macos-releaseWARNING135
macos-oldrelWARNING143
windows-develWARNING112
windows-releaseWARNING132
windows-oldrelWARNING111
wasm-releaseOK131

Exports:edgelistedges_to_networksextract.edgesintersubject_similarityNBSNBS_lmenetwork_lmnetwork_lmevizChordvizConnectogramvizGlassbrainvizHeatmapvizNetConnectogram

Dependencies:askpassbase64encbslibcachemcirclizeclicodetoolscolorspacecowplotcpp11crosstalkcurldata.tabledigestdoParalleldoSNOWdplyrevaluatefarverfastmapfontawesomeforeachfsgenericsggforceggplot2ggplotifyggraphggrepelGlobalOptionsgluegraphlayoutsgridExtragridGraphicsgtablehighrhtmltoolshtmlwidgetshttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemimeopensslotelpillarpkgconfigplotlyplyrpngpolyclippromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppParallelreshape2RfastrlangrmarkdownS7sassscalesshapesnowstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttinytextweenrutf8vctrsviridisviridisLitewithrxfunyamlyulab.utilszigg

Readme and manuals

Help Manual

Help pageTopics
edgelistedgelist
edges_to_networksedges_to_networks
extract.edgesextract.edges
intersubject_similarityintersubject_similarity
NBSNBS
NBSNBS_lme
network_lmnetwork_lm
network_lmenetwork_lme
vizChordvizChord
vizConnectogramvizConnectogram
vizGlassbrainvizGlassbrain
vizHeatmapvizHeatmap
vizNetConnectogramvizNetConnectogram