Package: FCtools 2.3.1
FCtools: Functional Connectivity Tools
Analyzing and visualizing brain connectivity data, including network-based statistics (NBS) for linear and linear mixed models, both at edge level and functional network level (Yeo's 7-networks (Schaefer et al. (2017) <doi:10.1093/cercor/bhx179>)). Plots include edge-wise connectograms, chord diagrams, network connectograms, heatmaps, and 3D glass brain connectivity plots. 'FCtools' works with vectors of edges (derived from connectivity/adjacency matrices) from the 'Brainnetome' (Fan et al. (2016) <doi:10.1093/cercor/bhw157>), 'Schaefer' (100 or 200, each with 19 'ASeg' subcortices) (Schaefer et al. (2017) <doi:10.1093/cercor/bhx179>, Fischl et al. (2002) <doi:10.1016/S0896-6273(02)00569-X>), and 'Automated Anatomical Labeling' (AAL) atlases (Tzourio-Mazoyer et al. (2002) <doi:10.1006/nimg.2001.0978>).
Authors:
FCtools_2.3.1.tar.gz
FCtools_2.3.1.zip(r-4.7-any)FCtools_2.3.1.zip(r-4.6-any)FCtools_2.3.1.zip(r-4.5-any)
FCtools_2.3.1.tgz(r-4.6-any)FCtools_2.3.1.tgz(r-4.5-any)
FCtools_2.3.1.tar.gz(r-4.7-any)FCtools_2.3.1.tar.gz(r-4.6-any)
FCtools_2.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
FCtools/json (API)
| # Install 'FCtools' in R: |
| install.packages('FCtools', repos = c('https://cogbrainhealthlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cogbrainhealthlab/fctools/issues
Pkgdown/docs site:https://cogbrainhealthlab.github.io
Last updated from:259f554eed. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 208 | ||
| source / vignettes | OK | 187 | ||
| linux-release | WARNING | 196 | ||
| macos-release | WARNING | 135 | ||
| macos-oldrel | WARNING | 143 | ||
| windows-devel | WARNING | 112 | ||
| windows-release | WARNING | 132 | ||
| windows-oldrel | WARNING | 111 | ||
| wasm-release | OK | 131 |
Exports:edgelistedges_to_networksextract.edgesintersubject_similarityNBSNBS_lmenetwork_lmnetwork_lmevizChordvizConnectogramvizGlassbrainvizHeatmapvizNetConnectogram
Dependencies:askpassbase64encbslibcachemcirclizeclicodetoolscolorspacecowplotcpp11crosstalkcurldata.tabledigestdoParalleldoSNOWdplyrevaluatefarverfastmapfontawesomeforeachfsgenericsggforceggplot2ggplotifyggraphggrepelGlobalOptionsgluegraphlayoutsgridExtragridGraphicsgtablehighrhtmltoolshtmlwidgetshttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemimeopensslotelpillarpkgconfigplotlyplyrpngpolyclippromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppParallelreshape2RfastrlangrmarkdownS7sassscalesshapesnowstringistringrsyssystemfontstibbletidygraphtidyrtidyselecttinytextweenrutf8vctrsviridisviridisLitewithrxfunyamlyulab.utilszigg
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| edgelist | edgelist |
| edges_to_networks | edges_to_networks |
| extract.edges | extract.edges |
| intersubject_similarity | intersubject_similarity |
| NBS | NBS |
| NBS | NBS_lme |
| network_lm | network_lm |
| network_lme | network_lme |
| vizChord | vizChord |
| vizConnectogram | vizConnectogram |
| vizGlassbrain | vizGlassbrain |
| vizHeatmap | vizHeatmap |
| vizNetConnectogram | vizNetConnectogram |
